Publications
Most of our publications are found under Fred’s Google Scholar Profile.
Selected Recent
2023
![From $t$-SNE to UMAP with contrastive learning](/images/publications/tSNE-to-UMAP.png)
From $t$-SNE to UMAP with contrastive learning
ICLR
·
2023
2022
![The Algebraic Path Problem for Graph Metrics](/images/publications/algebraic-path-problem.png)
The Algebraic Path Problem for Graph Metrics
ICML
·
2022
2021
![On UMAP' s True Loss Function](/images/publications/UMAP-loss.png)
On UMAP' s True Loss Function
NeurIPS
·
2021
Highlights
2021
![The Mutex Watershed and its Objective: Efficient, Parameter-Free Graph Partitioning](/images/publications/mutex-watershed.png)
The Mutex Watershed and its Objective: Efficient, Parameter-Free Graph Partitioning
IEEE Transactions on Pattern Analysis and Machine Intelligence
·
2021
2019
![ilastik: interactive machine learning for (bio)image analysis](/images/publications/ilastik.png)
ilastik: interactive machine learning for (bio)image analysis
Nature Methods
·
2019
2018
![Essentially No Barriers in Neural Network Energy Landscape](/images/publications/no-barriers.png)
Essentially No Barriers in Neural Network Energy Landscape
Proceedings of the 35th International Conference on Machine Learning
·
2018
![Learning Steerable Filters for Rotation Equivariant CNNs](/images/publications/equivariant-cnns.png)
Learning Steerable Filters for Rotation Equivariant CNNs
2018 IEEE/CVF Conference on Computer Vision and Pattern Recognition
·
2018
2017
![Multicut brings automated neurite segmentation closer to human performance](/images/publications/multicut.png)
Multicut brings automated neurite segmentation closer to human performance
Nature Methods
·
2017
2015
![A Comparative Study of Modern Inference Techniques for Structured Discrete Energy Minimization Problems](/images/publications/discrete-energy-minimization.png)
A Comparative Study of Modern Inference Techniques for Structured Discrete Energy Minimization Problems
International Journal of Computer Vision
·
2015
2014
![Graphical model for joint segmentation and tracking of multiple dividing cells](/images/publications/segment-track-dividing-cells.png)
Graphical model for joint segmentation and tracking of multiple dividing cells
Bioinformatics
·
2014
![Semi-Global Matching: A Principled Derivation in Terms of Message Passing](/images/publications/semi-global-matching.png)
Semi-Global Matching: A Principled Derivation in Terms of Message Passing
Lecture Notes in Computer Science
·
2014
2008
![Concise Representation of Mass Spectrometry Images by Probabilistic Latent Semantic Analysis](/images/publications/mass-spectrometry-analysis.png)
Concise Representation of Mass Spectrometry Images by Probabilistic Latent Semantic Analysis
Analytical Chemistry
·
2008
2005
![Optimal Lattices for Sampling](/images/publications/optimal-lattices.png)
Optimal Lattices for Sampling
IEEE Transactions on Information Theory
·
2005
2002
![Chemical Library Subset Selection Algorithms: A Unified Derivation Using Spatial Statistics](/images/publications/chemical-subset-selection.png)
Chemical Library Subset Selection Algorithms: A Unified Derivation Using Spatial Statistics
Journal of Chemical Information and Computer Sciences
·
2002
1998
![Development and assessment of new exchange-correlation functionals](/images/publications/HCTH.png)
Development and assessment of new exchange-correlation functionals
The Journal of Chemical Physics
·
1998
![Three-Dimensional Quantitative Similarity−Activity Relationships (3D QSiAR) from SEAL Similarity Matrices](/images/publications/3D-QSiAR.png)
Three-Dimensional Quantitative Similarity−Activity Relationships (3D QSiAR) from SEAL Similarity Matrices
Journal of Medicinal Chemistry
·
1998